I don't think there's many differences, but Wikipedia mentioned this:
Quote:
Critics have stated that the PS2 version's graphics were inferior to the graphics in the GameCube version. However, some felt that the large number of exclusive features made up for these shortcomings.[63] The largest addition to the game is "Separate Ways", a new scenario for Ada written by Haruo Murata.[59]
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Code Veronica was on the Dreamcast, PS2 and Gamecube.